Fol. Biol. 2002, 48, 182-191
https://doi.org/10.14712/fb2002048050182
Cloning and Expression of PARP-3 (Adprt3) and U3-55k, Two Genes Closely Linked on Mouse Chromosome 9
References
1. , S. F., Gish, W., Miller, W., Myers, E. W., Lipman, D. J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
<https://doi.org/10.1016/S0022-2836(05)80360-2>
2. , S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
<https://doi.org/10.1093/nar/25.17.3389>
3. , J.-C., Rolli, V., Schreiber, V., Niedergang, C., Apiou, F., Decker, P., Muller, S., Höger, T., Ménissier-de Murcia, J., de Murcia, G. (1999) PARP-2, a novel mammalian DNA damage-dependent poly(ADP-ribose) polymerase. J. Biol. Chem. 274, 17860-17868.
<https://doi.org/10.1074/jbc.274.25.17860>
4. , J.-C., Schreiber, V., Fraulob, V., Dollé, P., de Murcia, G., Niedergang, C. P. (2001) A bidirectional promoter connects the poly(ADP-ribose) polymerase 2 (PARP-2) gene to the gene for RNase P RNA. Structure and expression of the mouse PARP-2 gene. J. Biol. Chem. 276, 11092-11099.
<https://doi.org/10.1074/jbc.M007870200>
5. , E., Cottrill, P. B., Storozhenko, S., Fuangthong, M., Chen, Y., O'Farrell, M. K., Van Montagu, M., Inzé, D., Kushnir, S. (1998) Higher plants possess two structurally different poly(ADP-ribose) polymerases. Plant J. 15, 635-645.
<https://doi.org/10.1046/j.1365-313x.1998.00240.x>
6. , D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., Rapp, B. A., Wheeler, D. L. (2002) GenBank. Nucleic Acids Res. 30, 17-20.
<https://doi.org/10.1093/nar/30.1.17>
7. , H., Ebner, M., Marksteiner, R., Auer, B. (1999) pADPRT-2: a novel mammalian polymerizing(ADP-ribosyl)transferase gene related to truncated pADPRT homologues in plants and Caenorhabditis elegans. FEBS Lett. 449, 259-263.
<https://doi.org/10.1016/S0014-5793(99)00448-2>
8. , A. (2001) Physiology and pathophysiology of poly(ADP-ribosyl)ation. BioEssays 23, 795-806.
<https://doi.org/10.1002/bies.1115>
9. , B. W., McBride, O. W., Chen, D., Alkhatib, H., Bhatia, K., Hensley, P., Smulson, M. E. (1987) CDNA sequence, protein structure, and chromosomal location of the human gene for poly(ADP-ribose) polymerase. Proc. Natl. Acad. Sci. USA 84, 8370-8374.
<https://doi.org/10.1073/pnas.84.23.8370>
10. , D., Desnoyers, S., D'Silva, I., Poirier, G. G. (1999) Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions. Biochem. J. 342, 249-268.
<https://doi.org/10.1042/bj3420249>
11. , G., Ménissier-de Murcia, J. (1994) Poly(ADP-ribose) polymerase: a molecular nick-sensor. Trends Biochem. Sci. 19, 172-176.
<https://doi.org/10.1016/0968-0004(94)90280-1>
12. , M. A., Dush, M. K., Martin, G. R. (1988) Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc. Natl. Acad. Sci. USA 85, 8998-9002.
<https://doi.org/10.1073/pnas.85.23.8998>
13. , V., Vioque, A., Altman, S. (2002) RNase P: variations and uses. J. Biol. Chem. 277, 6759-6762.
<https://doi.org/10.1074/jbc.R100067200>
14. , Z., Wang, Z.-Q. (2001) Functions of poly(ADP-ribose) polymerase (PARP) in DNA repair, genomic integrity and cell death. Mutat. Res. 477, 97-110.
<https://doi.org/10.1016/S0027-5107(01)00111-7>
15. , K., Bhatia, K., Siwarski, D., Klinman, D., Cherney, B., Smulson, M. (1989) Sequence and organization of the mouse poly(ADP-ribose) polymerase gene. Nucleic Acids Res. 17, 3387-3401.
<https://doi.org/10.1093/nar/17.9.3387>
16. , M. K., Jacobson, E. L. (1999) Discovering new ADP-ribose polymer cycles: protecting the genome and more. Trends Biochem. Sci. 24, 415-417.
<https://doi.org/10.1016/S0968-0004(99)01481-4>
17. , P. A. (1998) DNA repair: PARP - another guardian angel? Curr. Biol. 8, R49-R51.
<https://doi.org/10.1016/S0960-9822(98)70032-6>
18. , M. (1999) A human poly(ADP-ribose) polymerase gene family (ADPRTL): DNA cloning of two novel poly(ADP-ribose) polymerase homologues. Genomics 57, 442-445.
<https://doi.org/10.1006/geno.1999.5799>
19. Junqueira, L. C., Carneiro, J., Kelley, R. O. (1995) Basic Histology. 8th edition, a LANGE medical book, Prentice-Hall International, Inc.
20. , P. G., Kim, S.-H., Taylor, R. D., Zebarjadian, Y., Funk, W. D., Morin, G. B., Yaswen, P., Campisi, J. (2001) TANK2, a new TRF1-associated poly(ADP-ribose) polymerase, causes rapid induction of cell death upon overexpression. J. Biol. Chem. 276, 35891-35899.
<https://doi.org/10.1074/jbc.M105968200>
21. , J., Shinagawa, A., Shibata, K., Yoshino, M., Itoh, M., Ishii, Y., Arakawa, T., Hara, A., Fukunishi, Y., Konno, H., et al. - The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium (2001) Functional annotation of a full-length mouse cDNA collection. Nature 409, 685-690.
22. , M. S. H., Threat, T. A., Wang, X., Horton, J. H., Cui, Y., Wang, X., Pryor, E., Paris, J., Wells-Smith, J., Kitchen, J. R., Rowe, L. B., Eppig, J., Satoh, T., Brant, L., Fujiwara, H., Yotsumoto, S., Nakashima, H. (1998) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum. Mol. Genet. 7, 1967-1978.
<https://doi.org/10.1093/hmg/7.12.1967>
23. , A. N., Kuprash, D. V., Petrov, V. N., Vdovichenko, K. K., Scanlan, M. J., Jongeneel, C. V., Lagarkova, M. A., Nedospasov, S. A. (2001) Cloning and characterization of TNKL, a member of tankyrase gene family. Genes Immun. 2, 52-55.
<https://doi.org/10.1038/sj.gene.6363722>
24. , E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., et al. - International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature 409, 860-921.
25. , L., Babiychuk, E., Kushnir, S., Van Montagu, M., Inzé, D. (1995) Characterization of an Arabidopsis thaliana DNA homologue to animal poly(ADP-ribose) polymerase. FEBS Lett. 364, 103-108.
26. , Y., Kirkland, J. B., Shah, G. M. (1998) Cellular responses to DNA damage in the absence of poly(ADP- ribose) polymerase. Biochem. Biophys. Res. Commun. 245, 1-10.
<https://doi.org/10.1006/bbrc.1998.8257>
27. , T., Satoh, M. S., Poirier, G. G., Klungland, A. (1995) Post-translational modification of poly(ADP-ribose) poly- merase induced by DNA strand breaks. Trends Biochem. Sci. 20, 405-411.
<https://doi.org/10.1016/S0968-0004(00)89089-1>
28. , B., Marshallsay, C., Rottmann, N., Lührmann, R. (1993) Isolation of U3 snoRNP from CHO cells: a novel 55 kDa protein binds to the central part of U3 snoRNA. Nucleic Acids Res. 21, 5377-5385.
<https://doi.org/10.1093/nar/21.23.5377>
29. , A. A., Granneman, S., Mattox, S. A., Speckmann, W. A., Jones, K., Pluk, H., van Venrooij, W. J., Terns, R. M., Terns, M. P. (2000) Interaction of the U3-55k protein with U3 snoRNA is mediated by the Box B/C motif of U3 and the WD repeats of U3-55k. Nucleic Acids Res. 28, 3462-3471.
<https://doi.org/10.1093/nar/28.18.3462>
30. Lyon, M. F., Kirby, M. C. (1996) Mouse chromosome atlas. In: Genetic Variants and Strains of the Laboratory Mouse, Third Edition, eds. Lyon, M. F., Rastan, S., Brown, S. D. M., pp. 881-923, Oxford University Press, Oxford.
31. , R. J., Deane, R., Lynch, D. K., Ye, Z.-S. J., Sanderson, G. M., Eyre, H. J., Sutherland, G. R., Daly, R. J. (2001) Identification of a novel human tankyrase through its interaction with the adaptor protein Grb14. J. Biol. Chem. 276, 17172-17180.
<https://doi.org/10.1074/jbc.M009756200>
32. , Q., Baldwin, K. T., Renzelli, A. J., McDaniel, A., Dong, L. (2001) TCDD-inducible poly(ADP-ribose) polymerase: a novel response to 2,3,7,8-tetrachlorodibenzo-p-dioxin. Biochem. Biophys. Res. Commun. 289, 499-506.
<https://doi.org/10.1006/bbrc.2001.5987>
33. , P. B., Zuo, Z. (1998) Purification and cDNA cloning of maize polyADP)-ribose polymerase. Plant Physiol. 118, 895-905.
<https://doi.org/10.1104/pp.118.3.895>
34. , M., Hillier, L., Kucaba, T., Allen, M., Barstead, R., Beck, C., Blistain, A., Bonaldo, M., Bowers, Y., Bowles, L., et al. (1999) An encyclopedia of mouse genes. Nat. Genet. 21, 191-194.
<https://doi.org/10.1038/5976>
35. , M., Suzuki, H., Kamada, N., Watanabe, M., Ueda, O., Nozaki, T., Jishage, K.-I., Watanabe, T., Sugimoto, T., Nakagama, H., Ochiya, T., Sugimura, T. (1999) Poly(ADP-ribose polymerase gene disruption conferred mice resistant to streptozotocin-induced diabetes. Proc. Natl. Acad. Sci. USA 96, 2301-2304.
36. , E. S., Fournier, M. J. (1995) The small nucleolar RNAs. Annu. Rev. Biochem. 64, 897-934.
<https://doi.org/10.1146/annurev.bi.64.070195.004341>
37. , J., Niedergang, C., Trucco, C., Ricoul, M., Dutrillaux, B., Mark, M., Oliver, F. J., Masson, M., Dierich, A., LeMeur, M., Walztinger, C., Chambon, P., de Murcia, G. (1997) Requirement of poly(ADP-ribose) polymerase in recovery from DNA damage in mice and in cells. Proc. Natl. Acad. Sci. USA 94, 7303-7307.
<https://doi.org/10.1073/pnas.94.14.7303>
38. , D., Munnia, A., Comtesse, N., Fischer, U., Steudel, W.-I., Feiden, W., Glass, B., Meese, E. U. (2001) Novel tankyrase-related gene detected with meningioma-specific sera. Clin. Cancer Res. 7, 113-119.
39. Nicholas, K. B., Nicholas, H. B., Jr., Deerfield, D. W., I. (1997) GeneDoc: analysis and visualization of genetic variation. EMBnet.news 4, (http://www.hgmp.mrc.ac.uk/embnet.news/vol4_2/genedoc.html).
40. , T., Takenouchi, N., Yamaguchi, M., Matsukage, A., Sugimura, T., Esumi H. (1990) Striking similarity of the distribution patterns of the poly(ADP-ribose) polymerase and DNA polymerase ß among various mouse organs. Biochem. Biophys. Res. Commun. 172, 377-384.
<https://doi.org/10.1016/0006-291X(90)90683-E>
41. , H., Soffner, J., Lührmann, R., van Venrooij, W. J. (1998) DNA cloning and characterization of the human U3 small nucleolar ribonucleoprotein complex-associated 55-kilodalton protein. Mol. Cell. Biol. 18, 488-498.
<https://doi.org/10.1128/MCB.18.1.488>
42. , K. D., Maglott, D. R. (2001) RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res. 29, 137-140.
<https://doi.org/10.1093/nar/29.1.137>
43. Sambrook, J., Fritsch, E. F., Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
44. , V., Amé, J.-C., Dollé, P., Schultz, I., Rinaldi, B., Fraulob, V., Ménissier-de Murcia, J., de Murcia, G. (2002) Poly(ADP-ribose) polymerase-2 (PARP-2) is required for efficient base excision DNA repair in association with PARP-1 and XRCC1. J. Biol. Chem. 277, 23028-23036.
<https://doi.org/10.1074/jbc.M202390200>
45. S., de Murcia, G. (2000) Poly(ADP-ribose) polymerase-1: what have we learned from the deficient mouse model? Mutat. Res. 460, 1-15.
<https://doi.org/10.1016/S0921-8777(00)00016-1>
46. , W. M., Amé, J.-C., Wilson, M. V., Wang, Z.-Q., Koh, D. W., Jacobson, M. K., Jacobson, E. L. (1998) Poly(ADP-ribose) polymerase null mouse cells synthesize ADP-ribose polymers. J. Biol. Chem. 273, 30069-30072.
<https://doi.org/10.1074/jbc.273.46.30069>
47. , S. (2001) The world according to PARP. Trends Biochem. Sci. 26, 174-179.
<https://doi.org/10.1016/S0968-0004(00)01780-1>
48. , T. F., Gaitatzes, C., Saxena, K., Neer, E. J. (1999) The WD repeat: a common architecture for diverse functions. Trends Biochem. Sci. 24, 181-185.
<https://doi.org/10.1016/S0968-0004(99)01384-5>
49. , G., Baker, W., van den Broek, A., Camon, E., Garcia-Pastor, M., Kanz, C., Kulikova, T., Leinonen, R., Lin, Q., Lombard, V., Lopez, R., Redaschi, N., Stoehr, P., Tuli, M. A., Tzouvara, K., Vaughan, R. (2002) The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 30, 21-26.
<https://doi.org/10.1093/nar/30.1.21>
50. , R. L., Feingold, E. A., Klausner, R. D., Collins, F S. (1999) The mammalian gene collection. Science 286, 455-457.
<https://doi.org/10.1126/science.286.5439.455>
51. , C. M., White, J. V., Smith, T. F. (1993) Structural analysis based on state-space modeling. Protein Sci. 2, 305-314.
<https://doi.org/10.1002/pro.5560020302>
52. , Y., Imanishi, T., Miyazaki, S., Fukami-Kobayashi, K., Saitou, N., Sugawara, H., Gojobori, T. (2002) DNA Data Bank of Japan (DDBJ) for genome scale research in life science. Nucleic Acids Res. 30, 27-30.
<https://doi.org/10.1093/nar/30.1.27>
53. , T. A., Madden, T. L. (1999) BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174, 247-250.
<https://doi.org/10.1111/j.1574-6968.1999.tb13575.x>
54. , J. D., Higgins, D. G., Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
<https://doi.org/10.1093/nar/22.22.4673>
55. , W.-M., Cortes, U., Wang, Z.-Q. (2001) Poly(ADP-ribose) polymerase: a guardian angel protecting the genome and suppressing tumorigenesis. Biochim. Biophys. Acta 1552, 27-37.
56. , J., Vos, H. R., Faber, A. W., van Venrooij, W. J., Raué, H. A. (2000) Yeast Rrp9p is an evolutionarily conserved U3 snoRNP protein essential for early pre-rRNA processing cleavages and requires box C for its association. RNA 6, 1660-1671.
<https://doi.org/10.1017/S1355838200001369>
57. , Z.-Q., Auer, B., Stingl, L., Berghammer, H., Haidacher, D., Schweiger, M., Wagner E. F. (1995) Mice lacking ADPRT and poly(ADP-ribosyl)ation develop normally but are susceptible to skin disease. Genes Dev. 9, 509-520.
<https://doi.org/10.1101/gad.9.5.509>
58. , Z.-Q., Stingl, L., Morrison, C., Jantsch, M., Los, M., Schulze-Osthoff, K., Wagner, E. F. (1997) PARP is important for genomic stability but dispensable in apoptosis. Genes Dev. 11, 2347-2358.
<https://doi.org/10.1101/gad.11.18.2347>
59. , D. L., Church, D. M., Lash, A. E., Leipe, D. D., Madden, T. L., Pontius, J. U., Schuler, G. D., Schriml, L. M., Tatusova, T. A., Wagner, L., Rapp, B. A. (2002) Database resources of the National Center for Biotechnology Information: 2002 update. Nucleic Acids Res. 30, 13-16.
<https://doi.org/10.1093/nar/30.1.13>
60. , J. V., Stultz, C. M., Smith, 1. F. (1994) Protein classification by stochastic modeling and optimal filtering of amino-acid sequences. Math. Biosci. 119, 35-75.
<https://doi.org/10.1016/0025-5564(94)90004-3>
61. , L., Gaitatzes, C., Neer, E., Smith, T. F. (2000) Thirty-plus functional families from a single motif. Protein Sci. 9, 2470-2476.
<https://doi.org/10.1110/ps.9.12.2470>
