Folia Biologica
Journal of Cellular and Molecular Biology, Charles University 

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Fol. Biol. 2004, 50, 136-141

https://doi.org/10.14712/fb2004050030136

Complete Nucleotide Sequences of ALV-Related Endogenous Retroviruses Available from the Draft Chicken Genome Sequence

Leonid Borisenko, A. V. Rynditch

Department of Molecular Oncogenetics, Institute of Molecular Biology and Genetics, Ukrainian Academy of Sciences, Kiev, Ukraine

References

1. Abdrakhmanov, I., Lodygin, D., Geroth, P., Arakawa, H., Law, A., Plachy, J., Korn, B., Buerstedde, J.-M. (2000) Large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Genome Res. 10, 2062-2069. <https://doi.org/10.1101/gr.1137900>
2. Boardman, P. E., Sanz-Ezquerro, J., Overton, I. M., Burt, D. W., Bosch, E., Fong, W. T., Tickle, C., Brown, W. R., Wilson, S. A., Hubbard, S. J. (2002) A comprehensive collection of chicken cDNAs. Curr. Biol. 22, 1965-1969. <https://doi.org/10.1016/S0960-9822(02)01296-4>
3. Borisenko, L. (2003) Avian endogenous retroviruses. Folia Biol. (Praha) 49, 177-182.
4. Borisenko, L., Rynditch, A. V. (2003) Novel endogenous retrovirus from the chicken genome. Biopolimers and Cell 19, 270-273. (in Russian) <https://doi.org/10.7124/bc.00065B>
5. Boyce-Jacino, M., O'Donoghue, K., Faras, A. (1992) Multiple complex families of endogenous retroviruses are highly conserved in the genus Gallus. J. Virol. 66, 4919-4929. <https://doi.org/10.1128/jvi.66.8.4919-4929.1992>
6. Buerstedde, J.-M., Arakawa, H., Watahiki, A., Carninci, P. P., Yoshihide Hayashizaki, Y., Korn, B., Plachy, J. (2002) The DT40 web site: sampling and connecting the genes of a B cell line. Nucleic Acids Res. 30, 230-231. <https://doi.org/10.1093/nar/30.1.230>
7. Coffin, J., Hughes, S., Varmus, H. (1997) Retroviruses. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
8. Felsenstein, J. (1989) PHYLIP - Phylogeny Inference Package (version 3.2). Cladistics 5, 164-166.
9. Herniou, E., Martin, J., Miller, K., Cook, J., Wilkinson, M., Tristem, M. (1998) Retroviral diversity and distribution in vertebrates. J. Virol. 72, 5955-5966. <https://doi.org/10.1128/JVI.72.7.5955-5966.1998>
10. Martin, J., Herniou, E., Cook, J., O'Neill, R., Tristem, M. (1997) Human endogenous retrovirus type I-related viruses have an apparently widespread distribution within vertebrates. J. Virol. 71, 437-443. <https://doi.org/10.1128/jvi.71.1.437-443.1997>
11. Nikiforov, M., Gudkov, A. (1994) ART-CH: a VL30 in chickens? J. Virol. 68, 846-853. <https://doi.org/10.1128/jvi.68.2.846-853.1994>
12. Sacco, M., Flannery, D., Howes, K., Venugopal, K. (2000) Avian endogenous retrovirus EAV-HP shares regions of identity with avian leukosis virus subgroup J and the avian retrotransposon ART-CH. J. Virol. 74, 1296-1306. <https://doi.org/10.1128/JVI.74.3.1296-1306.2000>
13. Tirunagaru, V. G., Sofer, L., Cui, J., Burnside, J. (2000) An expressed sequence tag database of T-cell-enriched activated chicken splenocytes: sequence analysis of 5251 clones. Genomics 66, 144-151. <https://doi.org/10.1006/geno.2000.6189>
14. Thompson, J. D., Higgins, D. G., Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680. <https://doi.org/10.1093/nar/22.22.4673>
15. Weissmahr, R., Schupbach, J., Boni, J. (1997) Reverse transcriptase activity in chicken embryo fibroblast culture supernatants is associated with particles containing endogenous avian retrovirus EAV-0 RNA. J. Virol. 71, 3005-3012. <https://doi.org/10.1128/jvi.71.4.3005-3012.1997>
16. Xiong, Y., Eickbuch, T. H. (1990) Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 9, 3353-3362. <https://doi.org/10.1002/j.1460-2075.1990.tb07536.x>
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