Fol. Biol. 2019, 65, 88-100
https://doi.org/10.14712/fb2019065020088
C-Terminal Part of Glutamate-Ammonia-Ligase Adenyltransferase Gene Identified by RAPD-HRM with 3H Primer for E. Coli Screening
References
1. 2013) Rapid detection and simultaneous genotyping of Cronobacter spp. (formerly Enterobacter sakazakii) in powdered infant formula using real-time PCR and high resolution melting (HRM) analysis. PLoS One 8, e67082.
< , X. Q., Yu, H. Q., Ruan, Z. X., Yang, L. L. (https://doi.org/10.1371/journal.pone.0067082>
2. 2017) Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice. Sci. Transl. Med. 9, eaaf6397.
< , G., Lynch, M. D., Lu, J., Dang, V. T. (https://doi.org/10.1126/scitranslmed.aaf6397>
3. 2001) Sensitivity and performance characteristics of a direct PCR with stool samples in comparison to conventional techniques for diagnosis of Shigella and enteroinvasive Escherichia coli infection in children with acute diarrhoea in Calcutta. India J. Med. Microbiol. 50, 667-674.
< , S., Chatterjee, A., Dutta, P., Rajendran, K. (https://doi.org/10.1099/0022-1317-50-8-667>
4. 2016) Rapid and inexpensive species differentiation using a multiplex realtime polymerase chain reaction high-resolution melt assay. Anal. Biochem. 500, 15-17.
< , K. M., Perez, A. C., Sweetin, K. C. (https://doi.org/10.1016/j.ab.2016.01.013>
5. FAO (2011) Preventing E. coli in Food. Available online: http://www.fao.org/fileadmin/user_upload/fcc/news/1_ FAO_Preventing-E.Coli-inFood_FCC_2011.06.23.pdf (Accessed on 20 November 2017).
6. 2014) Development and assessment of multiplex high resolution melting assay as a tool for rapid single-tube identification of five Brucella species. BMC Res. Notes 7, 903.
< , K. K., Sells, J., Lee, R., Beckstrom-Sternberg, S. M., Foster, J. T., Whatmore, A. M. (https://doi.org/10.1186/1756-0500-7-903>
7. 2017) Comparison of methods for determining the effectiveness of antibacterial functionalized textiles. PloS One 12, e0188304.
< , H., Jordan, L., Keitel, L., Keil, C. (https://doi.org/10.1371/journal.pone.0188304>
8. 2005) Real‐time polymerase chain reaction for the food microbiologist: technologies, applications, and limitations. J. Food Sci. 70, R49-R53.
< , S. E., Connor, C. J., Wang, H. H. (https://doi.org/10.1111/j.1365-2621.2005.tb07149.x>
9. 2017) High-resolution melting analysis for rapid detection of sequence type 131 Escherichia coli. Antimicrob. Agents Chemother. 61, e00265.
< , L. B., Hanson, N. D. (https://doi.org/10.1128/AAC.00265-17>
10. 1996) Real time quantitative PCR. Genome Res. 6, 986-994.
< , C. A., Stevens, J., Livak, K. J., Williams, P. M. (https://doi.org/10.1101/gr.6.10.986>
11. 2000) PCR detection of Escherichia coli O157:H7 directly from stools: evaluation of commercial extraction methods for purifying fecal DNA. J. Clin. Microbiol. 38, 4108-4113.
< , J. L., Louie, L., Simor, A. E., Louie, M. (https://doi.org/10.1128/JCM.38.11.4108-4113.2000>
12. 2003) Detection and quantification of Escherichia coli O157:H7 in environmental samples by real‐time PCR. J. Appl. Microbiol. 94, 421-431.
< , A. M., Grieve, C. M. (https://doi.org/10.1046/j.1365-2672.2003.01848.x>
13. 2010) Alternative microbial methods: An overview and selection criteria. Food Microbiol. 27, 710-730.
< , V., Jacxsens, L., Luning, P., Rajkovic, A. (https://doi.org/10.1016/j.fm.2010.04.008>
14. 1999) Genotype analysis of Escherichia coli strains isolated from children and chickens living in close contact. Appl. Environ. Microbiol. 65, 472-476.
< , S., Gilks, C., Kimari, J., Obanda, A. (https://doi.org/10.1128/AEM.65.2.472-476.1999>
15. 2011) Random amplified polymorphic DNA (RAPD) markers and its applications. Sci. Vis. 11, 116-124.
, N. S., Gurusubramanian, G. (
16. 2016) Antibiotic resistance, RAPD-PCR typing of multiple drug resistant strains of Escherichia coli from urinary tract infection (UTI). J. Clin. Diagn. Res. 10, DC05.
, X. A., Santhanam, A. (
17. 1992) Map position of the glnE gene from Escherichia coli. J. Bacteriol. 174, 7876.
< , W. B., Bender, R. A. (https://doi.org/10.1128/jb.174.23.7876-7877.1992>
18. 2013) Molecular detection of bacterial contamination in gnotobiotic rodent units. Gut Microbes 4, 361-370.
< , C. D., Shanahan, M. T., Manick, S., Bower, M. A. (https://doi.org/10.4161/gmic.25824>
19. 2007) A method for fast and simple detection of major diarrhoeagenic Escherichia coli in the routine diagnostic laboratory. Clin. Microbiol. Infect. 13, 516-524.
< , S., Olsen, K. E. P., Scheutz, F., Krogfelt, K. A. (https://doi.org/10.1111/j.1469-0691.2007.01692.x>
20. Raybourne, R. B. (1999) Flow cytometric detection of pathogenic E. coli in food. Curr. Protoc. Cytom. 8, chapter 11, unit 11.6.
21. 2007) Trends in analytical methodology in food safety and quality: monitoring microorganisms and genetically modified organisms. Trends Food Sci. Technol. 18, 306-319.
< , D., Lombard, B., Smith, H., Rzezutka, A. (https://doi.org/10.1016/j.tifs.2007.01.009>
22. 2008) High rates of Escherichia coli transmission between livestock and humans in rural Uganda. J. Clin. Microbiol. 46, 3187-3191.
< , I. B., Gillespie, T. R., Isabirye-Basuta, G., Goldberg, T. L. (https://doi.org/10.1128/JCM.00285-08>
23. 2008) Molecular genetic differentiation of avian Escherichia coli by RAPD-PCR. Braz. J. Microbiol. 39, 494-497.
< , T. Z., Madani, S. A., Karimi, V., Khazaeli, F. A. (https://doi.org/10.1590/S1517-83822008000300015>
24. 2003) Evaluation of enzyme-linked immunosorbent assays and a PCR test for detection of Shiga toxins for Shiga toxin-producing Escherichia coli in cattle herds. J. Clin. Microbiol. 41, 5760-5763.
< , M., Richter, H., Conraths, F. J., Geue, L. (https://doi.org/10.1128/JCM.41.12.5760-5763.2003>
25. 2010) Application of high resolution melt (HRM) analysis for duplex detection of Macrobrachium rosenbergii nodavirus (MrNV) and extra small virus (XSV) in shrimp. Mol. Cell Probes. 24, 291-297.
< , S., Molthathong, S., Phiwsaiya, K., Jaengsanong, C., Chuchird, N. (https://doi.org/10.1016/j.mcp.2010.06.003>
26. 2007) Real-time PCR and enzyme-linked fluorescent assay methods for detecting Shiga-toxin-producing Escherichia coli in mincemeat samples. Can. J. Microbiol. 53, 337-342.
< , A., Scaramagli, S., Bergami, R., Mazzini, C. (https://doi.org/10.1139/W06-142>
27. 2010) High-resolution melt-curve analysis of randomamplified polymorphic DNA markers, for the characterisation of pathogenic Leptospira. Ann. Trop. Med. Parasitol. 104, 151-161.
< , S. M., Craig, S. B., Graham, G. C., Cobbold, R. C. (https://doi.org/10.1179/136485910X12607012374037>
28. 1993). Rapid methods and automation in food microbiology: beyond Delphi forecast. J. Rapid Methods Autom. Microbiol. 2, 1-7.
< , P. C. (https://doi.org/10.1111/j.1745-4581.1993.tb00332.x>
29. 2017) Identification and quantification of virulence factors of enterotoxigenic Escherichia coli by high-resolution melting curve quantitative PCR. BMC Microbiol. 17, 114.
< , W., Zijlstra, R. T., Gänzle, M. G. (https://doi.org/10.1186/s12866-017-1023-5>
30. WHO (2015) WHO’s first ever global estimates of foodborne diseases find children under 5 account for almost one third of deaths. News release (media center), Geneva, Switzerland. Available online: http://www.who.int/mediacentre/ news/releases/2015/foodborne-disease-estimates/en/ (Accessed on 20 November 2017).
31. WHO, UNICEF (2017) Progress on drinking water, sanitation and hygiene: 2017 update and SDG baselines. World Health Organization, New York, 2017.
32. 2010) Direct fluorescence in situ hybridization (FISH) in Escherichia coli with a target-specific quantum dot-based molecular beacon. Biosens. Bioelectron. 26, 491-496.
< , S. M., Tian, Z. Q., Zhang, Z. L., Huang, B. H. (https://doi.org/10.1016/j.bios.2010.07.067>