Fol. Biol. 2024, 70, 166-178
https://doi.org/10.14712/fb2024070030166
Exploration of the Development and Cell Communication of Aneuploid Osteoblasts and Osteoclasts in Giant Cell Tumour of Bone Using Single-Cell RNA Sequencing
References
1. 2016) Costimulation blockade in autoimmunity and transplantation: the CD28 pathway. J. Immunol. 197, 2045-2050.
< , A. B., Ford, M. L., Larsen, C. P. (https://doi.org/10.4049/jimmunol.1601135>
2. 2019) Fenestral diaphragms and PLVAP associations in liver sinusoidal endothelial cells are developmentally regulated. Sci. Rep. 9, 15698.
< , K., Lokka, E., Mokkala, E. et al. (https://doi.org/10.1038/s41598-019-52068-x>
3. 2018) Single-cell map of diverse immune phenotypes in the breast tumour microenvironment. Cell 174, 1293-1308.e1236.
< , E., Carr, A. J., Plitas, G. et al. (https://doi.org/10.1016/j.cell.2018.05.060>
4. 2018) Osteoblast differentiation of equine induced pluripotent stem cells. Biol. Open 7, bio033514.
< , A., Lindsay, T., Everett, A. et al. (https://doi.org/10.1242/bio.033514>
5. 2021) Aneuploidy renders cancer cells vulnerable to mitotic checkpoint inhibition. Nature 590, 486-491.
< , Y., McFarland, J. M., Abdusamad, M. et al. (https://doi.org/10.1038/s41586-020-03114-6>
6. 2019) Hypertrophic chondrocyte-specific Col10a1 controlling elements in Cre recombinase transgenic studies. Am. J. Transl. Res. 11, 6672-6679.
, J., Chen, F., Bian, H. et al. (
7. 2020) Single-cell transcriptomics reveals regulators underlying immune cell diversity and immune subtypes associated with prognosis in nasopharyngeal carcinoma. Cell Res. 30, 1024-1042.
< , Y. P., Yin, J. H., Li, W. F. et al. (https://doi.org/10.1038/s41422-020-0374-x>
8. 2011) EGFL6 promotes endothelial cell migration and angiogenesis through the activation of extracellular signal-regulated kinase. J. Biol. Chem. 286, 22035-22046.
< , S. M., Qin, A., Tickner, J. et al. (https://doi.org/10.1074/jbc.M110.187633>
9. 2019) Single-cell RNA-Seq analysis of retinal development identifies NFI factors as regulating mitotic exit and late-born cell specification. Neuron 102, 1111-1126.e5.
< , B. S., Stein-O’Brien, G. L., Shiau, F. et al. (https://doi.org/10.1016/j.neuron.2019.04.010>
10. 2022) CTLA4, PD-1, PD-L1, PD-L2, TIM-3, TIGIT, and LAG3 DNA methylation is associated with BAP1-aberrancy, transcriptional activity, and overall survival in uveal melanoma. J. Immunother. 45, 324-334
, L., Carrillo Cano, T. M., Zarbl, R. et al. (
11. 2020) Role of dendritic cell-mediated immune response in oral homeostasis: a new mechanism of osteonecrosis of the jaw. FASEB J. 34, 2595-2608.
< , R., Kurago, Z., Cutler, C. W. et al. (https://doi.org/10.1096/fj.201901819RR>
12. 2022) Single-cell RNA sequencing reveals differential expression of EGFL7 and VEGF in giant-cell tumour of bone and osteosarcoma. Exp. Biol. Med. (Maywood) 247, 1214-1227.
< , M., Feng, W., Song, D. et al. (https://doi.org/10.1177/15353702221088238>
13. 2021) Single-cell RNA sequencing reveals the migration of osteoclasts in giant cell tumour of bone. Front. Oncol. 11, 715552.
< , W., He, M., Jiang, X. et al. (https://doi.org/10.3389/fonc.2021.715552>
14. 2021) Delineating copy number and clonal substructure in human tumours from single-cell transcriptomes. Nat. Biotechnol. 39, 599-608.
< , R., Bai, S., Henderson, Y. C. et al. (https://doi.org/10.1038/s41587-020-00795-2>
15. 2022) Epigenetic lockdown of CDKN1A (p21) and CDKN2A (p16) characterises the neoplastic spindle cell component of giant cell tumours of bone. J. Pathol. 257, 687-696.
< , J., Mellert, K., Geißler, S. et al. (https://doi.org/10.1002/path.5925>
16. 2021) Cell competition removes segmental aneuploid cells from Drosophila imaginal disc-derived tissues based on ribosomal protein gene dose. Elife 10, e61172.
< , Z., Chuen, J., Kiparaki, M. et al. (https://doi.org/10.7554/eLife.61172>
17. 2021) Inference and analysis of cell-cell communication using CellChat. Nat. Commun. 12, 1088.
< , S., Guerrero-Juarez, C. F., Zhang, L. et al. (https://doi.org/10.1038/s41467-021-21246-9>
18. 2015) TIGIT predominantly regulates the immune response via regulatory T cells. J. Clin. Invest. 125, 4053-4062.
< , S., Sakuishi, K., Ngiow, S. F. et al. (https://doi.org/10.1172/JCI81187>
19. 2022) CircSLC8A1 exacerbates hypoxia-induced myocardial injury via interacting with miR-214-5p to upregulate TEAD1 expression. Int. Heart J. 63, 591-601.
< , Z., Wang, T., Zhang, L. et al. (https://doi.org/10.1536/ihj.21-547>
20. 2020) Single-cell RNA sequencing reveals the tumour microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient. Genome Med. 12, 47.
< , H. W., Chung, W., Lee, H. O. et al. (https://doi.org/10.1186/s13073-020-00741-6>
21. 2020) Denosumab in giant cell tumour of bone: current status and pitfalls. Front. Oncol. 10, 580605.
< , H., Gao, J., Gao, Y. et al. (https://doi.org/10.3389/fonc.2020.580605>
22. 2019) Mutual regulation of MDM4 and TOP2A in cancer cell proliferation. Mol. Oncol. 13, 1047-1058.
< , T., Zhang, H., Yi, S. et al. (https://doi.org/10.1002/1878-0261.12457>
23. 2020) Benchmarking single-cell RNA-sequencing protocols for cell atlas projects. Nat. Biotechnol. 38, 747-755.
< , E., Lafzi, A., Moutinho, C. et al. (https://doi.org/10.1038/s41587-020-0469-4>
24. 2009) Genomic instability in giant cell tumour of bone. A study of 52 cases using DNA ploidy, relocalization FISH, and array-CGH analysis. Genes Chromosomes Cancer 48, 468-479.
< , L., Szuhai, K., Krenács, T. et al. (https://doi.org/10.1002/gcc.20656>
25. 2018) Bone cell activity in clinical prostate cancer bone metastasis and its inverse relation to tumour cell androgen receptor activity. Int. J. Mol. Sci. 19, 1223.
< , A., Bovinder Ylitalo, E., Thysell, E. et al. (https://doi.org/10.3390/ijms19041223>
26. 2019) Single-cell RNA-seq highlights intra-tumoural heterogeneity and malignant progression in pancreatic ductal adenocarcinoma. Cell Res. 29, 725-738.
< , J., Sun, B. F., Chen, C. Y. et al. (https://doi.org/10.1038/s41422-019-0195-y>
27. 2017) Reversed graph embedding resolves complex single-cell trajectories. Nat. Methods 14, 979-982.
< , X., Mao, Q., Tang, Y. et al. (https://doi.org/10.1038/nmeth.4402>
28. 2021) The 2020 WHO Classification of Soft Tissue Tumours: news and perspectives. Pathologica 113, 70-84.
< , M., Bellan, E., Dei Tos, A. P. (https://doi.org/10.32074/1591-951X-213>
29. 2019) In vitro study of the effects of denosumab on giant cell tumour of bone: comparison with zoledronic acid. Pathol. Oncol. Res. 25, 409-419.
< , I., Takami, M., Miyamoto, A. et al. (https://doi.org/10.1007/s12253-017-0362-8>
30. 2017) Aneuploid cell survival relies upon sphingolipid homeostasis. Cancer Res. 77, 5272-5286.
< , Y. C., Yuwen, H., Wang, K. et al. (https://doi.org/10.1158/0008-5472.CAN-17-0049>
31. 2016a) Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq. Science 352, 189-196.
< , I., Izar, B., Prakadan, S. M. et al. (https://doi.org/10.1126/science.aad0501>
32. 2016b) Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma. Nature 539, 309-313.
< , I., Venteicher, A. S., Hebert, C. et al. (https://doi.org/10.1038/nature20123>
33. 2020) Current concepts in the treatment of giant cell tumour of bone. Curr. Opin. Oncol. 32, 332-338.
< , L., Dijkstra, S., van de Sande, M. et al. (https://doi.org/10.1097/CCO.0000000000000645>
34. 2021) TIGIT signaling pathway regulates natural killer cell function in chronic hepatitis B virus infection. Front. Med. (Lausanne) 8, 816474.
< , J., Hou, H., Mao, L. et al. (https://doi.org/10.3389/fmed.2021.816474>
35. 2022) Hsp90 regulates the tumourigenic function of tyrosine protein kinase in osteosarcoma. Clin. Exp. Pharmacol. Physiol. 49, 380-390.
< , Z. P., Zhu, H., Shen, F. et al. (https://doi.org/10.1111/1440-1681.13613>
36. 2019) CellMarker: a manually curated resource of cell markers in human and mouse. Nucleic Acids Res. 47, D721-D728.
< , X., Lan, Y., Xu, J. et al. (https://doi.org/10.1093/nar/gky900>
37. 2020) Immune checkpoint targeting TIGIT in hepatocellular carcinoma. Am. J. Transl. Res. 12, 3212-3224.
, Q., Xu, J., Gu, X. et al. (
38. 2020) Single-cell RNA landscape of intratumoural heterogeneity and immunosuppressive microenvironment in advanced osteosarcoma. Nat. Commun. 11, 6322.
< , Y., Yang, D., Yang, Q. et al. (https://doi.org/10.1038/s41467-020-20059-6>